Survival-associated meQTLs across different cancer types


We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.


e.g., "BLCA"
e.g., "rs11600543"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
log-rank test p-value
Sample size
Median survival time AA
Median survival time Aa
Median survival time aa
Dispaly
PCPG rs3136589 chr3:172237826 A/C 8.63E-6 178 25.87 19.88 24.7 KM Plot
PCPG rs3153 chr21:34609505 G/A 0.000294 175 21.9 31.47 25.08 KM Plot
PCPG rs3165 chr21:38595912 T/C 0.000328 172 25 23.53 15.22 KM Plot
PCPG rs3169375 chr16:90110279 C/T 9.88E-9 175 25.77 20.2 6.62 KM Plot
PCPG rs3178659 chr16:1713758 C/T 5.01E-5 177 25.6 18.2 15.1 KM Plot
PCPG rs3213892 chr2:136552517 G/A 3.78E-5 173 25.77 20.2 9.72 KM Plot
PCPG rs3215347 chr12:53498783 TA/T 0 173 25.17 27.08 3.05 KM Plot
PCPG rs329629 chr17:3238989 C/A 0.000226 171 18.1 25.87 26.88 KM Plot
PCPG rs336564 chr3:161075149 G/A 1.11E-16 173 25.87 19.85 1.63 KM Plot
PCPG rs336571 chr3:161068084 C/T 1.11E-16 174 25.87 19.85 1.63 KM Plot
PCPG rs336573 chr3:161067740 A/G 1.11E-16 174 25.87 19.85 1.63 KM Plot
PCPG rs336576 chr3:161066432 C/G 1.11E-16 174 25.87 19.85 1.63 KM Plot
PCPG rs336581 chr3:161082739 T/C 0.000268 172 25.87 19.85 3.17 KM Plot
PCPG rs336584 chr3:161081785 C/A 0.000236 174 25.87 19.85 3.17 KM Plot
PCPG rs336588 chr3:161080584 G/T 0.000236 174 25.87 19.85 3.17 KM Plot